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  5. Sam_g25932

Sam_g25932


Description : component *(uS7) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002478_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25932

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00119380 RPS5B, ATRPS5B,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AMTR_s00090p00050460 RPS5B, ATRPS5B,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT2G37270 RPS5B, ATRPS5B ribosomal protein 5B 0.06 OrthoFinder output from all 47 species
AT3G11940 AML1, RPS5A, ATRPS5A ribosomal protein 5A 0.09 OrthoFinder output from all 47 species
Adi_g078109 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ala_g00869 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aop_g01983 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0374.g067208 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cba_g20695 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.09G021200.1 AML1, RPS5A,... component *(uS7) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ceric.09G021300.1 RPS5B, ATRPS5B,... component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.09G021600.1 AML1, RPS5A,... component *(uS7) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021332.10 RPS5B, ATRPS5B Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Cre06.g290950 RPS5B, ATRPS5B Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Dac_g10905 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Dde_g00502 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ehy_g00502 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01026328001 RPS5B, ATRPS5B Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
GSVIVT01033419001 RPS5B, ATRPS5B Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Gb_04954 RPS5B, ATRPS5B component RPS5 of SSU proteome 0.07 OrthoFinder output from all 47 species
LOC_Os01g01060.1 RPS5B, ATRPS5B,... component RPS5 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os11g29190.1 RPS5B, ATRPS5B,... component RPS5 of SSU proteome 0.06 OrthoFinder output from all 47 species
Len_g46814 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_10428487g0010 RPS5B, ATRPS5B component RPS5 of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp3g10570.1 RPS5B, ATRPS5B component RPS5 of SSU proteome 0.09 OrthoFinder output from all 47 species
Msp_g06764 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Pp3c20_18970V3.1 RPS5B, ATRPS5B,... ribosomal protein 5B 0.06 OrthoFinder output from all 47 species
Pp3c23_6150V3.1 RPS5B, ATRPS5B,... ribosomal protein 5B 0.05 OrthoFinder output from all 47 species
Pp3c8_16820V3.1 RPS5B, ATRPS5B,... ribosomal protein 5B 0.08 OrthoFinder output from all 47 species
Pp3c8_16860V3.1 RPS5B, ATRPS5B,... ribosomal protein 5B 0.06 OrthoFinder output from all 47 species
Ppi_g23590 AML1, RPS5A, ATRPS5A component *(uS7) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo164593 AML1, RPS5A, ATRPS5A Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Smo271466 RPS5B, ATRPS5B Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Solyc10g078620.1.1 AML1, RPS5A,... component RPS5 of SSU proteome 0.09 OrthoFinder output from all 47 species
Solyc11g042610.2.1 RPS5B, ATRPS5B,... component RPS5 of SSU proteome 0.08 OrthoFinder output from all 47 species
Spa_g17272 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Tin_g01481 RPS5B, ATRPS5B component *(uS7) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e025608_P002 RPS5B, ATRPS5B,... component RPS5 of SSU proteome 0.1 OrthoFinder output from all 47 species
Zm00001e031425_P002 AML1, RPS5A,... component RPS5 of SSU proteome 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR023798 Ribosomal_S7_dom 3 128
No external refs found!