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  5. Sam_g24888

Sam_g24888


Description : methylation reader *(ECT) & original description: none


Gene families : OG0000330 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24888

Target Alias Description ECC score Gene Family Method Actions
Adi_g041963 ECT6 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087071 ECT7 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108043 ECT5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114839 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08536 ECT8 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g36173 ECT8 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G070900.1 ECT7, Ceric.02G070900 methylation reader *(ECT) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.02G102000.1 ECT5, Ceric.02G102000 methylation reader *(ECT) & original description:... 0.04 OrthoFinder output from all 47 species
Dde_g02898 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17655 ECT8 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05658 ECT2 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16648 ECT8 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g23266 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26129 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00634 ECT2 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02836 ECT8 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19610 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16711 ECT5 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01211 ECT2 methylation reader *(ECT) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007275 YTH_domain 417 555
No external refs found!