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  5. Sam_g23959

Sam_g23959


Description : pre-60S ribosomal subunit assembly factor *(SSF1) & original description: none


Gene families : OG0005695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005695_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g23959
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AT5G61770 PPAN PETER PAN-like protein 0.08 OrthoFinder output from all 47 species
Adi_g059515 PPAN pre-60S ribosomal subunit assembly factor *(SSF1) &... 0.02 OrthoFinder output from all 47 species
Aob_g03256 PPAN pre-60S ribosomal subunit assembly factor *(SSF1) &... 0.02 OrthoFinder output from all 47 species
Aop_g08209 PPAN pre-60S ribosomal subunit assembly factor *(SSF1) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene01259.t1 PPAN, Aspi01Gene01259 pre-60S ribosomal subunit assembly factor *(SSF1) &... 0.03 OrthoFinder output from all 47 species
Ceric.32G047900.1 PPAN, Ceric.32G047900 pre-60S ribosomal subunit assembly factor *(SSF1) &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.51 PPAN Peter Pan-like protein OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre10.g450879 PPAN Peter Pan-like protein OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01028012001 PPAN Peter Pan-like protein OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
MA_56165g0010 PPAN no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g06030.1 PPAN pre-60S ribosomal subunit assembly factor (SSF1) 0.02 OrthoFinder output from all 47 species
Spa_g09893 PPAN pre-60S ribosomal subunit assembly factor *(SSF1) &... 0.02 OrthoFinder output from all 47 species
Tin_g01008 PPAN pre-60S ribosomal subunit assembly factor *(SSF1) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 35 277
No external refs found!