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  5. Sam_g23640

Sam_g23640


Description : component *(eEF1B-beta/-delta) of eEF1B eEF1A-GDP-recycling complex & original description: none


Gene families : OG0001031 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001031_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g23640
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00211240 evm_27.TU.AmTr_v1... Protein biosynthesis.translation elongation.eEF1B... 0.03 OrthoFinder output from all 47 species
AT5G19510 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.05 OrthoFinder output from all 47 species
Adi_g084758 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.02 OrthoFinder output from all 47 species
Aop_g17687 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.03 OrthoFinder output from all 47 species
Azfi_s0050.g031167 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.04 OrthoFinder output from all 47 species
Azfi_s0061.g035108 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.03 OrthoFinder output from all 47 species
Cba_g15952 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.04 OrthoFinder output from all 47 species
Ceric.23G080700.1 Ceric.23G080700 component *(eEF1B-beta/-delta) of eEF1B... 0.04 OrthoFinder output from all 47 species
Ceric.32G024000.1 Ceric.32G024000 component *(eEF1B-beta/-delta) of eEF1B... 0.05 OrthoFinder output from all 47 species
Dac_g00420 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.04 OrthoFinder output from all 47 species
Dac_g18134 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.03 OrthoFinder output from all 47 species
Dac_g26124 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.02 OrthoFinder output from all 47 species
Ehy_g02379 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.03 OrthoFinder output from all 47 species
GSVIVT01008526001 No alias Protein biosynthesis.translation elongation.eEF1B... 0.05 OrthoFinder output from all 47 species
GSVIVT01037374001 No alias Protein biosynthesis.translation elongation.eEF1B... 0.07 OrthoFinder output from all 47 species
Gb_07694 No alias component eEF1B-beta/-delta of eEF1B eEF1A-GDP-recycling complex 0.04 OrthoFinder output from all 47 species
LOC_Os07g42300.1 LOC_Os07g42300 component eEF1B-beta/-delta of eEF1B eEF1A-GDP-recycling complex 0.03 OrthoFinder output from all 47 species
LOC_Os07g46750.1 LOC_Os07g46750 component eEF1B-beta/-delta of eEF1B eEF1A-GDP-recycling complex 0.07 OrthoFinder output from all 47 species
Len_g09861 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.03 OrthoFinder output from all 47 species
MA_102713g0020 No alias component eEF1B-beta/-delta of eEF1B eEF1A-GDP-recycling complex 0.04 OrthoFinder output from all 47 species
Mp8g01660.1 No alias component eEF1B-beta/-delta of eEF1B eEF1A-GDP-recycling complex 0.08 OrthoFinder output from all 47 species
Msp_g04383 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.04 OrthoFinder output from all 47 species
Msp_g10669 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.03 OrthoFinder output from all 47 species
Nbi_g06059 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.04 OrthoFinder output from all 47 species
Pir_g08117 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.02 OrthoFinder output from all 47 species
Ppi_g00671 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.03 OrthoFinder output from all 47 species
Sam_g14316 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.03 OrthoFinder output from all 47 species
Sam_g16177 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.04 OrthoFinder output from all 47 species
Sam_g17349 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.04 OrthoFinder output from all 47 species
Sam_g31515 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.04 OrthoFinder output from all 47 species
Solyc01g098000.3.1 Solyc01g098000 component eEF1B-beta/-delta of eEF1B eEF1A-GDP-recycling complex 0.09 OrthoFinder output from all 47 species
Solyc07g016150.4.1 Solyc07g016150 component eEF1B-beta/-delta of eEF1B eEF1A-GDP-recycling complex 0.04 OrthoFinder output from all 47 species
Solyc11g072190.2.1 Solyc11g072190 component eEF1B-beta/-delta of eEF1B eEF1A-GDP-recycling complex 0.08 OrthoFinder output from all 47 species
Spa_g07922 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.05 OrthoFinder output from all 47 species
Spa_g07923 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.04 OrthoFinder output from all 47 species
Spa_g12874 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.03 OrthoFinder output from all 47 species
Spa_g21700 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.07 OrthoFinder output from all 47 species
Spa_g51035 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.06 OrthoFinder output from all 47 species
Tin_g21340 No alias component *(eEF1B-beta/-delta) of eEF1B... 0.02 OrthoFinder output from all 47 species
Zm00001e035548_P001 Zm00001e035548 component eEF1B-beta/-delta of eEF1B eEF1A-GDP-recycling complex 0.02 OrthoFinder output from all 47 species
Zm00001e035783_P001 Zm00001e035783 component eEF1B-beta/-delta of eEF1B eEF1A-GDP-recycling complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEA Interproscan
BP GO:0006414 translational elongation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR014038 EF1B_bsu/dsu_GNE 195 262
No external refs found!