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  5. Sam_g23289

Sam_g23289


Description : not classified & original description: none


Gene families : OG0003970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g23289

Target Alias Description ECC score Gene Family Method Actions
AT5G63420 emb2746 RNA-metabolising metallo-beta-lactamase family protein 0.04 OrthoFinder output from all 47 species
Adi_g054822 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G090000.1 emb2746, Ceric.02G090000 exoribonuclease *(RNase J) & original description:... 0.05 OrthoFinder output from all 47 species
Dcu_g22106 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_26634 emb2746 exo-/endoribonuclease (RNase J) 0.02 OrthoFinder output from all 47 species
Gb_29169 emb2746 exo-/endoribonuclease (RNase J) 0.04 OrthoFinder output from all 47 species
MA_497021g0010 emb2746 exo-/endoribonuclease (RNase J) 0.02 OrthoFinder output from all 47 species
Ore_g40893 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g25090 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18551 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025070_P003 emb2746, Zm00001e025070 exo-/endoribonuclease (RNase J) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
CC GO:0032039 integrator complex IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 3 90
No external refs found!