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  5. Sam_g23170

Sam_g23170


Description : actin-depolymerizing factor & original description: none


Gene families : OG0000202 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000202_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g23170
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Als_g45060 ADF8 actin-depolymerizing factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g45430 ATADF4, ADF4 actin-depolymerizing factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g63569 ADF10 actin-depolymerizing factor & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g09664 ADF8 actin-depolymerizing factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20262 ADF6, ATADF6 actin-depolymerizing factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22521 ADF10 actin-depolymerizing factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g29577 ADF6, ATADF6 actin-depolymerizing factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_180200g0010 ADF6, ATADF6 actin-depolymerizing factor 0.02 OrthoFinder output from all 47 species
MA_8419970g0010 ADF6, ATADF6 actin-depolymerizing factor 0.02 OrthoFinder output from all 47 species
Pir_g23190 ADF7 actin-depolymerizing factor & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g41533 ADF6, ATADF6 actin-depolymerizing factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g20237 No alias actin-depolymerizing factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40300 ADF11 actin-depolymerizing factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35946 No alias acTin-depolymerizing factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g39673 ADF8 acTin-depolymerizing factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002108 ADF-H 16 134
No external refs found!