Lfl_g27513 (HIS1-3)

Aliases : HIS1-3

Description : linker histone *(H1) & original description: none

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g27513

Target	Alias	Description	ECC score	Gene Family Method
AT1G06760	No alias	winged-helix DNA-binding transcription factor family protein	0.01	OrthoFinder output from all 47 species
Aop_g06850	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0049.g030788	No alias	linker histone *(H1) & original description: CDS=1-786	0.02	OrthoFinder output from all 47 species
Cre13.g567450	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.01	OrthoFinder output from all 47 species
Dde_g23302	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os07g08710.1	LOC_Os07g08710	linker histone (H1)	0.02	OrthoFinder output from all 47 species
Lfl_g24690	HIS1-3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_102574g0010	No alias	linker histone (H1)	0.01	OrthoFinder output from all 47 species
MA_5951905g0010	HIS1-3	linker histone (H1)	0.01	OrthoFinder output from all 47 species
Ore_g06319	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g35364	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g084240.3.1	HIS1-3, Solyc02g084240	linker histone (H1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	44	107

External Links

No external refs found!