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  5. Sam_g20005

Sam_g20005


Description : transcriptional co-activator *(BET/GTE) & original description: none


Gene families : OG0000177 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000177_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g20005
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00204230 NPX1,... Transcription factor GTE10 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00021p00136760 GTE4,... Transcription factor GTE4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G06230 GTE4 global transcription factor group E4 0.03 OrthoFinder output from all 47 species
AT3G27260 GTE8 global transcription factor group E8 0.02 OrthoFinder output from all 47 species
Adi_g009282 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Adi_g010441 GTE8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g050232 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g057352 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g075932 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g076959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g076960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086860 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g086861 GTE8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g094613 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Adi_g113196 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g114774 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g116688 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12929 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Als_g15387 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Als_g15396 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Als_g30418 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Als_g34018 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.08 OrthoFinder output from all 47 species
Aob_g06548 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Aob_g09032 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Aop_g09751 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0059.g034649 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Cba_g05911 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Ceric.01G079700.1 GTE8, Ceric.01G079700 transcriptional co-activator *(BET/GTE) & original... 0.06 OrthoFinder output from all 47 species
Ceric.38G016200.1 BET9, ATBET9,... transcriptional co-activator *(BET/GTE) & original... 0.05 OrthoFinder output from all 47 species
Cre08.g367300 BET9, ATBET9 Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g08190 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g14312 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g39217 GTE8 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g08588 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g31224 GTE4 mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001835001 GTE8 Transcription factor GTE8 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01008492001 NPX1 Transcription factor GTE10 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01014233001 GTE4 Transcription factor GTE4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01020670001 GTE4 Transcription factor GTE4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01034328001 GTE1, GTE01, IMB1 Transcription factor GTE1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01038522001 GTE7 Transcription factor GTE7 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_04671 NPX1 transcriptional co-activator (BET/GTE) 0.05 OrthoFinder output from all 47 species
Gb_30202 GTE8 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
LOC_Os01g11580.1 GTE4, LOC_Os01g11580 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
LOC_Os02g15220.2 GTE4, LOC_Os02g15220 transcriptional co-activator (BET/GTE) 0.04 OrthoFinder output from all 47 species
Len_g17766 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.05 OrthoFinder output from all 47 species
Len_g40831 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g04029 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
MA_10435152g0020 GTE8 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
MA_124055g0010 BET9, ATBET9 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
MA_18020g0010 GTE4 transcriptional co-activator (BET/GTE) 0.06 OrthoFinder output from all 47 species
Mp1g20280.1 GTE4 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Mp2g14370.1 GTE4 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Mp2g23150.1 GTE7 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g02143 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g09154 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Ore_g30636 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.06 OrthoFinder output from all 47 species
Pir_g03405 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.04 OrthoFinder output from all 47 species
Pir_g04263 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.05 OrthoFinder output from all 47 species
Pir_g04886 GTE1, GTE01, IMB1 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Pir_g15608 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Pir_g19514 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g29804 BET9, ATBET9 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c12_15290V3.1 NPX1, Pp3c12_15290 bromodomain and extraterminal domain protein 10 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002096 GTE8 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0137.g022457 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Sam_g12554 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g106280.3.1 GTE7, Solyc01g106280 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Solyc02g093880.3.1 GTE8, Solyc02g093880 transcriptional co-activator (BET/GTE) 0.03 OrthoFinder output from all 47 species
Solyc07g062660.4.1 GTE4, Solyc07g062660 transcriptional co-activator (BET/GTE) 0.06 OrthoFinder output from all 47 species
Solyc12g014170.2.1 GTE4, Solyc12g014170 transcriptional co-activator (BET/GTE) 0.04 OrthoFinder output from all 47 species
Spa_g26928 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Spa_g48528 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.06 OrthoFinder output from all 47 species
Spa_g57288 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Tin_g14012 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e009037_P001 Zm00001e009037 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Zm00001e015036_P002 NPX1, Zm00001e015036 transcriptional co-activator (BET/GTE) 0.01 OrthoFinder output from all 47 species
Zm00001e016462_P001 GTE4, Zm00001e016462 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Zm00001e024513_P001 Zm00001e024513 transcriptional co-activator (BET/GTE) 0.03 OrthoFinder output from all 47 species
Zm00001e024861_P001 GTE4, Zm00001e024861 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Zm00001e029260_P001 BET9, ATBET9,... transcriptional co-activator (BET/GTE) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR027353 NET_dom 446 507
IPR001487 Bromodomain 274 358
No external refs found!