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  5. Sam_g19197

Sam_g19197


Description : ARID-type transcription factor & original description: none


Gene families : OG0002366 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002366_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19197

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00128600 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.ARID... 0.02 OrthoFinder output from all 47 species
AT2G17410 No alias ARID/BRIGHT DNA-binding domain-containing protein 0.03 OrthoFinder output from all 47 species
Ala_g15855 No alias ARID-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g41730.1 LOC_Os06g41730 transcription factor (ARID) 0.03 OrthoFinder output from all 47 species
Len_g44864 No alias ARID-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g07310.1 No alias transcription factor (ARID) 0.02 OrthoFinder output from all 47 species
Zm00001e037576_P002 Zm00001e037576 transcription factor (ARID) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001606 ARID_dom 133 217
IPR002068 A-crystallin/Hsp20_dom 388 470
No external refs found!