Sam_g18428


Description : regulatory protein *(SCAMP) of exocytic trafficking & original description: none


Gene families : OG0001155 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001155_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g18428

Target Alias Description ECC score Gene Family Method Actions
Aop_g01667 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Azfi_s2043.g108825 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Ceric.06G044300.1 Ceric.06G044300 regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
Dac_g03217 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.04 OrthoFinder output from all 47 species
LOC_Os03g38590.1 LOC_Os03g38590 Secretory carrier-associated membrane protein 4 OS=Oryza... 0.03 OrthoFinder output from all 47 species
LOC_Os07g37740.1 LOC_Os07g37740 Putative secretory carrier-associated membrane protein 1... 0.02 OrthoFinder output from all 47 species
LOC_Os08g06440.1 LOC_Os08g06440 Secretory carrier-associated membrane protein 6 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Msp_g06051 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.04 OrthoFinder output from all 47 species
Solyc10g009180.3.1 SC3, Solyc10g009180 Secretory carrier-associated membrane protein 3... 0.03 OrthoFinder output from all 47 species
Zm00001e004899_P001 SC3, Zm00001e004899 Secretory carrier-associated membrane protein 4 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Zm00001e012486_P001 SC3, Zm00001e012486 Secretory carrier-associated membrane protein 4 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Zm00001e019630_P002 Zm00001e019630 Secretory carrier-associated membrane protein 2 OS=Oryza... 0.05 OrthoFinder output from all 47 species
Zm00001e035266_P003 Zm00001e035266 Secretory carrier-associated membrane protein 1 OS=Oryza... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR007273 SCAMP 118 290
No external refs found!