Sam_g18022


Description : not classified & original description: none


Gene families : OG0001431 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001431_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g18022
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00129280 EMB2763,... RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
AT2G17510 EMB2763 ribonuclease II family protein 0.03 OrthoFinder output from all 47 species
Adi_g016018 EMB2763 exoribonuclease *(RRP44a) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02705 No alias exoribonuclease *(SOV) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20907 EMB2763 exoribonuclease *(RRP44a) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68610 EMB2763 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g014006 EMB2763 not classified & original description: CDS=194-3646 0.02 OrthoFinder output from all 47 species
Azfi_s0330.g065371 EMB2763 exoribonuclease *(RRP44a) & original description: CDS=168-3026 0.02 OrthoFinder output from all 47 species
Ceric.34G018800.1 EMB2763, Ceric.34G018800 exoribonuclease *(RRP44a) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000640.22 EMB2763 Exosome complex exonuclease RRP44 homolog A... 0.01 OrthoFinder output from all 47 species
Cre14.g613850 EMB2763 Exosome complex exonuclease RRP44 homolog A... 0.01 OrthoFinder output from all 47 species
Dde_g02979 EMB2763 exoribonuclease *(RRP44a) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01623 EMB2763 exoribonuclease *(RRP44a) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g03710.1 EMB2763, LOC_Os03g03710 exoribonuclease (Dis3/RRP44) 0.02 OrthoFinder output from all 47 species
Lfl_g05664 EMB2763 exoribonuclease *(RRP44a) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433522g0020 EMB2763 Exosome complex exonuclease RRP44 homolog A... 0.02 OrthoFinder output from all 47 species
MA_207701g0010 EMB2763 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g18110.1 EMB2763 Exosome complex exonuclease RRP44 homolog A... 0.02 OrthoFinder output from all 47 species
Pir_g01998 EMB2763 exoribonuclease *(RRP44a) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01351 EMB2763 exoribonuclease *(RRP44a) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07036 EMB2763 exoribonuclease *(RRP44a) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004358 glutamate N-acetyltransferase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006526 arginine biosynthetic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001900 RNase_II/R 526 868
IPR041505 Dis3_CSD2 425 492
No external refs found!