Sam_g17794

Description : regulatory protein *(CTL) of cellulose-hemicellulose network assembly & original description: none

Gene families : OG0004024 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004024_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g17794
Cluster	HCCA: Cluster_186

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00097040	HOT2, ELP,...	Cell wall.cellulose.synthesis.cellulose microfibrils and...	0.05	OrthoFinder output from all 47 species
AT1G05850	HOT2, ELP,...	Chitinase family protein	0.04	OrthoFinder output from all 47 species
AT3G16920	CTL2, ATCTL2	chitinase-like protein 2	0.04	OrthoFinder output from all 47 species
Adi_g058657	HOT2, ELP,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g12871	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.05	OrthoFinder output from all 47 species
Ala_g11734	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.04	OrthoFinder output from all 47 species
Als_g10357	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.03	OrthoFinder output from all 47 species
Aob_g14857	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.03	OrthoFinder output from all 47 species
Aop_g04697	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.04	OrthoFinder output from all 47 species
Ceric.12G097100.1	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.03	OrthoFinder output from all 47 species
Ceric.34G040100.1	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.06	OrthoFinder output from all 47 species
Dac_g24169	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.03	OrthoFinder output from all 47 species
Dcu_g41169	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.04	OrthoFinder output from all 47 species
Dde_g19197	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.06	OrthoFinder output from all 47 species
Ehy_g11684	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.04	OrthoFinder output from all 47 species
Ehy_g12346	HOT2, ELP,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g31474	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.03	OrthoFinder output from all 47 species
Ehy_g31475	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.03	OrthoFinder output from all 47 species
GSVIVT01031685001	HOT2, ELP,...	Cell wall.cellulose.synthesis.cellulose microfibrils and...	0.03	OrthoFinder output from all 47 species
GSVIVT01035029001	CTL2, ATCTL2	Cell wall.cellulose.synthesis.cellulose microfibrils and...	0.06	OrthoFinder output from all 47 species
Gb_05672	No alias	CTL cellulose microfibrils and hemicellulose interaction protein	0.03	OrthoFinder output from all 47 species
Gb_10203	No alias	CTL cellulose microfibrils and hemicellulose interaction protein	0.03	OrthoFinder output from all 47 species
Gb_10245	CTL2, ATCTL2	CTL cellulose microfibrils and hemicellulose interaction protein	0.05	OrthoFinder output from all 47 species
LOC_Os09g32080.2	HOT2, ELP,...	CTL cellulose microfibrils and hemicellulose interaction protein	0.07	OrthoFinder output from all 47 species
Len_g11945	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.07	OrthoFinder output from all 47 species
Lfl_g08383	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.06	OrthoFinder output from all 47 species
MA_10435764g0010	HOT2, ELP,...	Chitinase-like protein 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp7g04510.1	HCHIB, B-CHI,...	CTL cellulose microfibrils and hemicellulose interaction protein	0.04	OrthoFinder output from all 47 species
Msp_g08778	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.03	OrthoFinder output from all 47 species
Nbi_g16520	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.07	OrthoFinder output from all 47 species
Ore_g10891	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.03	OrthoFinder output from all 47 species
Pir_g19511	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.05	OrthoFinder output from all 47 species
Pnu_g09632	CTL2, ATCTL2	regulatory protein *(CTL) of cellulose-hemicellulose...	0.02	OrthoFinder output from all 47 species
Ppi_g62066	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.04	OrthoFinder output from all 47 species
Smo227948	HOT2, ELP,...	Cell wall.cellulose.synthesis.cellulose microfibrils and...	0.04	OrthoFinder output from all 47 species
Solyc09g098540.3.1	HOT2, ELP,...	CTL cellulose microfibrils and hemicellulose interaction protein	0.05	OrthoFinder output from all 47 species
Spa_g25324	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.07	OrthoFinder output from all 47 species
Tin_g04554	HOT2, ELP,...	regulatory protein *(CTL) of cellulose-hemicellulose...	0.05	OrthoFinder output from all 47 species
Zm00001e034566_P001	HOT2, ELP,...	CTL cellulose microfibrils and hemicellulose interaction protein	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	IEA	Interproscan
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006030	chitin metabolic process	None	Extended
BP	GO:0006032	chitin catabolic process	IEA	Interproscan
BP	GO:0006040	amino sugar metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046348	amino sugar catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901071	glucosamine-containing compound metabolic process	None	Extended
BP	GO:1901072	glucosamine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0051087	chaperone binding	IEP	HCCA
MF	GO:0061630	ubiquitin protein ligase activity	IEP	HCCA
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000726	Glyco_hydro_19_cat	126	355

External Links

No external refs found!

Sam_g17794

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation