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  5. Sam_g17115

Sam_g17115


Description : not classified & original description: none


Gene families : OG0002443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002443_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17115
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Ceric.11G088700.1 CML42, Ceric.11G088700 calcium sensor *(CML) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G089100.1 CML43, Ceric.11G089100 not classified & original description: pacid=50595630... 0.04 OrthoFinder output from all 47 species
Ceric.11G089600.1 Ceric.11G089600 calcium sensor *(CML) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.12G027300.1 ATCML9, CAM9,... not classified & original description: pacid=50601078... 0.03 OrthoFinder output from all 47 species
Msp_g21665 UNE14 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004655 CML42 calcium sensor *(CML) & original description: CDS=1-621 0.03 OrthoFinder output from all 47 species
Spa_g35719 No alias calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g38845 CML42 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 51 76
IPR002048 EF_hand_dom 198 263
No external refs found!