Cluster_117 Alsophila latebrosa 5.78 % 0.00337 0.036223 Cluster_172 Alsophila latebrosa 15.09 % 1.3e-05 7.6e-05 Cluster_46 Alsophila latebrosa 30.71 % 0.0 0.0 Cluster_62 Amblovenatum opulentum 10.62 % 5e-06 4.6e-05 Cluster_67 Amblovenatum opulentum 10.53 % 0.000202 0.001536 Cluster_322 Amblovenatum opulentum 17.54 % 0.0 2.5e-05 Cluster_69 Amblovenatum opulentum 12.73 % 0.000152 0.009074 Cluster_637 Amblovenatum opulentum 17.86 % 0.0 3.7e-05 Cluster_13 Amblovenatum opulentum 12.23 % 0.0 0.0 Cluster_281 Amblovenatum opulentum 9.24 % 0.0 7e-06 Cluster_64 Amblovenatum opulentum 6.25 % 0.001363 0.018486 Cluster_235 Amblovenatum opulentum 5.0 % 0.014618 0.039677 Cluster_305 Amblovenatum opulentum 22.41 % 0.0 0.0 Cluster_198 Amblovenatum opulentum 27.72 % 0.0 0.0 Cluster_6 Amblovenatum opulentum 13.11 % 4.2e-05 0.000349 Cluster_278 Amblovenatum opulentum 8.62 % 0.007508 0.027266 Cluster_123 Amblovenatum opulentum 7.14 % 0.000143 0.005644 Cluster_133 Amblovenatum opulentum 16.35 % 0.0 0.0 Cluster_83 Amblovenatum opulentum 21.92 % 0.0 0.0 Cluster_156 Amblovenatum opulentum 7.95 % 2.5e-05 0.000667 Cluster_236 Amblovenatum opulentum 16.67 % 2e-06 1.2e-05 Cluster_91 Amblovenatum opulentum Sam_g16833 details
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  5. Sam_g16833

Sam_g16833


Description : EC_6.2 ligase forming carbon-sulfur bond & original description: none


Gene families : OG0000612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16833

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00117760 CER8, LACS1,... Enzyme classification.EC_6 ligases.EC_6.2 ligase forming... 0.01 OrthoFinder output from all 47 species
AT1G49430 LRD2, LACS2 long-chain acyl-CoA synthetase 2 0.04 OrthoFinder output from all 47 species
AT2G47240 CER8, LACS1 AMP-dependent synthetase and ligase family protein 0.02 OrthoFinder output from all 47 species
AT2G47245 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g08877 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.06 OrthoFinder output from all 47 species
Ehy_g08481 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01031892001 LRD2, LACS2 Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_09959 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_18621 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_32132 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os01g48910.2 LACS4, LOC_Os01g48910 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os05g04170.1 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g16036 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Lfl_g08320 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
MA_10432761g0010 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10437042g0010 LACS6, ATLACS6 Long chain acyl-CoA synthetase 6, peroxisomal... 0.01 OrthoFinder output from all 47 species
MA_839621g0010 No alias Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g11320 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Ppi_g17117 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014643 LACS6, ATLACS6 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025894 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Solyc01g079240.3.1 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc01g109180.4.1 LRD2, LACS2,... Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc08g082280.4.1 LACS4, Solyc08g082280 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc09g075770.3.1 LACS6, ATLACS6,... peroxisomal long-chain acyl-CoA synthetase 0.04 OrthoFinder output from all 47 species
Spa_g26451 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Spa_g40891 LACS6, ATLACS6 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Spa_g47685 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Zm00001e024608_P001 LRD2, LACS2,... Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e040332_P001 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0015936 coenzyme A metabolic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 67 525
No external refs found!