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  5. Sam_g16723

Sam_g16723


Description : exine patterning factor *(DEX1) & original description: none


Gene families : OG0004786 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004786_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16723

Target Alias Description ECC score Gene Family Method Actions
Aev_g11052 DEX1 exine patterning factor *(DEX1) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05329 DEX1 exine patterning factor *(DEX1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19810 DEX1 exine patterning factor *(DEX1) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01034014001 DEX1 Cell wall.sporopollenin.exine wall formation.DEX1 exine... 0.03 OrthoFinder output from all 47 species
Gb_30710 DEX1 exine patterning factor (DEX1) 0.03 OrthoFinder output from all 47 species
Mp1g00230.1 DEX1 exine patterning factor (DEX1) 0.01 OrthoFinder output from all 47 species
Solyc09g013130.3.1 DEX1, Solyc09g013130 exine patterning factor (DEX1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR013517 FG-GAP 538 594
No external refs found!