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  5. Sam_g16122

Sam_g16122


Description : regulatory protein *(SCAMP) of exocytic trafficking & original description: none


Gene families : OG0001155 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001155_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16122

Target Alias Description ECC score Gene Family Method Actions
Adi_g105603 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Dac_g01451 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.03 OrthoFinder output from all 47 species
LOC_Os08g06440.1 LOC_Os08g06440 Secretory carrier-associated membrane protein 6 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Lfl_g40917 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Nbi_g05251 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Spa_g01929 No alias regulatory protein *(SCAMP) of exocytic trafficking &... 0.02 OrthoFinder output from all 47 species
Zm00001e041560_P001 Zm00001e041560 Secretory carrier-associated membrane protein 6 OS=Oryza... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003879 ATP phosphoribosyltransferase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR007273 SCAMP 99 271
No external refs found!