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  5. Sam_g15780

Sam_g15780


Description : mRNA chaperone *(RLSB/BSF) & original description: none


Gene families : OG0002842 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002842_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15780
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00066980 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.02 OrthoFinder output from all 47 species
Adi_g084122 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g27044 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06275 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g31939 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16982 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g17119 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11259 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene22512.t1 Aspi01Gene22512 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene47105.t1 Aspi01Gene47105 mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G070600.1 Ceric.06G070600 mRNA chaperone *(RLSB/BSF) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.09G007500.1 Ceric.09G007500 not classified & original description: pacid=50587358... 0.05 OrthoFinder output from all 47 species
Ceric.39G005900.1 Ceric.39G005900 mRNA chaperone *(RLSB/BSF) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g04128 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09799 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013706001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.05 OrthoFinder output from all 47 species
LOC_Os05g45920.1 LOC_Os05g45920 plastidial mRNA chaperone (RLSB/BSF) 0.03 OrthoFinder output from all 47 species
Len_g12293 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21211 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g04958 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14237 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g072036.1.1 Solyc04g072036 plastidial mRNA chaperone (RLSB/BSF) 0.02 OrthoFinder output from all 47 species
Spa_g17865 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e032251_P002 Zm00001e032251 plastidial mRNA chaperone (RLSB/BSF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006535 cysteine biosynthetic process from serine IEP HCCA
BP GO:0006563 L-serine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0009001 serine O-acetyltransferase activity IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016412 serine O-acyltransferase activity IEP HCCA
MF GO:0016413 O-acetyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 623 684
No external refs found!