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  5. Sam_g15087

Sam_g15087


Description : assembly factor involved in RuBisCo assembly *(BSD2) & original description: none


Gene families : OG0007502 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007502_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15087

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00065110 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
AT3G47650 No alias DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g06316 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.03 OrthoFinder output from all 47 species
Ala_g06623 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.07 OrthoFinder output from all 47 species
Als_g00356 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.08 OrthoFinder output from all 47 species
Aop_g26060 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.05 OrthoFinder output from all 47 species
Ceric.36G042600.1 Ceric.36G042600 assembly factor involved in RuBisCo assembly *(BSD2) &... 0.02 OrthoFinder output from all 47 species
Dac_g38789 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.03 OrthoFinder output from all 47 species
Dcu_g03433 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.05 OrthoFinder output from all 47 species
Dde_g14872 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.1 OrthoFinder output from all 47 species
GSVIVT01015532001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
GSVIVT01035845001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Len_g00237 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.06 OrthoFinder output from all 47 species
Lfl_g40205 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.02 OrthoFinder output from all 47 species
Msp_g11910 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.02 OrthoFinder output from all 47 species
Nbi_g01616 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.07 OrthoFinder output from all 47 species
Ore_g07584 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.05 OrthoFinder output from all 47 species
Ore_g07585 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.05 OrthoFinder output from all 47 species
Pir_g60370 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.04 OrthoFinder output from all 47 species
Pnu_g00272 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.04 OrthoFinder output from all 47 species
Ppi_g57647 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018366 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.02 OrthoFinder output from all 47 species
Spa_g03931 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.08 OrthoFinder output from all 47 species
Tin_g09665 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!