Description : EC_5.5 intramolecular lyase & original description: none
Gene families : OG0004073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004073_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Sam_g14458 | |
Cluster | HCCA: Cluster_135 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00097p00060630 | LYC,... | Secondary metabolism.terpenoids.terpenoid... | 0.03 | OrthoFinder output from all 47 species | |
AT3G10230 | LYC | lycopene cyclase | 0.05 | OrthoFinder output from all 47 species | |
Als_g03737 | LYC | EC_5.5 intramolecular lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0182.g056455 | LYC | EC_5.5 intramolecular lyase & original description: CDS=1-1671 | 0.05 | OrthoFinder output from all 47 species | |
Ceric.10G080900.1 | LYC, Ceric.10G080900 | EC_5.5 intramolecular lyase & original description:... | 0.02 | OrthoFinder output from all 47 species | |
Cre08.g358538 | LYC | Secondary metabolism.terpenoids.terpenoid... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os02g09750.1 | LYC, LOC_Os02g09750 | lycopene beta cyclase (LCY-b) | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g29048 | LYC | EC_5.5 intramolecular lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g13520 | LYC | EC_5.5 intramolecular lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Smo266613 | LYC | Secondary metabolism.terpenoids.terpenoid... | 0.03 | OrthoFinder output from all 47 species | |
Solyc04g040190.1.1 | LYC, Solyc04g040190 | lycopene beta cyclase (LCY-b) | 0.02 | OrthoFinder output from all 47 species | |
Solyc10g079480.1.1 | LYC, Solyc10g079480 | lycopene beta cyclase (LCY-b) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e013933_P001 | LYC, Zm00001e013933 | lycopene beta cyclase (LCY-b) | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
MF | GO:0004427 | inorganic diphosphate phosphatase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
MF | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009523 | photosystem II | IEP | HCCA |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
MF | GO:0015035 | protein-disulfide reductase activity | IEP | HCCA |
MF | GO:0015036 | disulfide oxidoreductase activity | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | HCCA |
MF | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |