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  5. Sam_g14458

Sam_g14458


Description : EC_5.5 intramolecular lyase & original description: none


Gene families : OG0004073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14458
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00097p00060630 LYC,... Secondary metabolism.terpenoids.terpenoid... 0.03 OrthoFinder output from all 47 species
AT3G10230 LYC lycopene cyclase 0.05 OrthoFinder output from all 47 species
Als_g03737 LYC EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0182.g056455 LYC EC_5.5 intramolecular lyase & original description: CDS=1-1671 0.05 OrthoFinder output from all 47 species
Ceric.10G080900.1 LYC, Ceric.10G080900 EC_5.5 intramolecular lyase & original description:... 0.02 OrthoFinder output from all 47 species
Cre08.g358538 LYC Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder output from all 47 species
LOC_Os02g09750.1 LYC, LOC_Os02g09750 lycopene beta cyclase (LCY-b) 0.02 OrthoFinder output from all 47 species
Nbi_g29048 LYC EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13520 LYC EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Smo266613 LYC Secondary metabolism.terpenoids.terpenoid... 0.03 OrthoFinder output from all 47 species
Solyc04g040190.1.1 LYC, Solyc04g040190 lycopene beta cyclase (LCY-b) 0.02 OrthoFinder output from all 47 species
Solyc10g079480.1.1 LYC, Solyc10g079480 lycopene beta cyclase (LCY-b) 0.03 OrthoFinder output from all 47 species
Zm00001e013933_P001 LYC, Zm00001e013933 lycopene beta cyclase (LCY-b) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!