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  5. Sam_g13873

Sam_g13873


Description : G-class RAB GTPase & original description: none


Gene families : OG0000865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13873
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00039990 AtRABG3d,... Vesicle trafficking.regulation of membrane tethering and... 0.04 OrthoFinder output from all 47 species
Ala_g12075 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000754.29 ATRABG3C, ATRAB7D, RABG3c Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
Len_g54625 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g072060.4.1 ATRABG3A,... G-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Spa_g11565 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016125 sterol metabolic process IEP HCCA
BP GO:0016126 sterol biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 177
No external refs found!