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  5. Sam_g13117

Sam_g13117


Description : transcriptional co-activator *(BET/GTE) & original description: none


Gene families : OG0000177 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000177_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13117
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00204230 NPX1,... Transcription factor GTE10 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G06230 GTE4 global transcription factor group E4 0.02 OrthoFinder output from all 47 species
AT2G34900 GTE1, GTE01, IMB1 Transcription factor GTE6 0.03 OrthoFinder output from all 47 species
AT3G01770 ATBET10, BET10 bromodomain and extraterminal domain protein 10 0.03 OrthoFinder output from all 47 species
AT5G46550 No alias DNA-binding bromodomain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g057352 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Adi_g057853 GTE6 receptor component *(Tom20) of outer mitochondrion... 0.02 OrthoFinder output from all 47 species
Adi_g086861 GTE8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g094613 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Aev_g03209 GTE1, GTE01, IMB1 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Aev_g11409 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Als_g63818 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Aob_g06548 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Aop_g06213 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Cba_g61631 GTE7 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Ceric.31G056100.1 GTE6, Ceric.31G056100 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Cre01.g048900 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g02788 GTE1, GTE01, IMB1 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g15873 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g45449 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01016315001 GTE1, GTE01, IMB1 Transcription factor GTE6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01020670001 GTE4 Transcription factor GTE4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os02g15220.2 GTE4, LOC_Os02g15220 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Len_g17766 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Len_g40392 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g01559 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g10203 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
MA_10429630g0020 NPX1 Transcription factor GTE10 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp1g20280.1 GTE4 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Ppi_g11422 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g12746 GTE1, GTE01, IMB1 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Solyc09g090370.3.1 GTE1, GTE01,... transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Spa_g50968 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e009037_P001 Zm00001e009037 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Zm00001e024861_P001 GTE4, Zm00001e024861 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 136 221
IPR027353 NET_dom 301 362
No external refs found!