Sam_g12787

Description : component *(uS17) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001674 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001674_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g12787

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00158320	EMB1080,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00046p00028310	EMB1080,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
AT3G48930	EMB1080	Nucleic acid-binding, OB-fold-like protein	0.03	OrthoFinder output from all 47 species
AT4G30800	No alias	Nucleic acid-binding, OB-fold-like protein	0.03	OrthoFinder output from all 47 species
AT5G23740	RPS11-BETA	ribosomal protein S11-beta	0.02	OrthoFinder output from all 47 species
Adi_g004838	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Adi_g014139	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g021180	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g124939	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ala_g17880	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ala_g34347	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g00917	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0268.g061080	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g28522	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.06G039400.1	Ceric.06G039400	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000551.22	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Cre12.g514500	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Dac_g01215	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dac_g01981	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g05219	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g21739	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ehy_g14354	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01012877001	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01035927001	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
LOC_Os04g52361.1	EMB1080, LOC_Os04g52361	component RPS11 of SSU proteome	0.04	OrthoFinder output from all 47 species
LOC_Os08g10608.1	RPS11-BETA,...	component RPS11 of SSU proteome	0.06	OrthoFinder output from all 47 species
MA_19350g0010	EMB1080	component RPS11 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp4g23360.1	EMB1080	component RPS11 of SSU proteome	0.07	OrthoFinder output from all 47 species
Mp6g10500.1	EMB1080	component RPS11 of SSU proteome	0.08	OrthoFinder output from all 47 species
Msp_g22593	RPS11-BETA	component *(uS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Msp_g27112	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g01705	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ore_g11217	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ore_g11218	EMB1080	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g31814	RPS11-BETA	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c1_27980V3.1	EMB1080, Pp3c1_27980	Nucleic acid-binding, OB-fold-like protein	0.03	OrthoFinder output from all 47 species
Pp3c2_13690V3.1	EMB1080, Pp3c2_13690	Nucleic acid-binding, OB-fold-like protein	0.02	OrthoFinder output from all 47 species
Pp3s116_30V3.1	EMB1080, Pp3s116_30	Nucleic acid-binding, OB-fold-like protein	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017004	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo268639	EMB1080	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc06g073790.3.1	Solyc06g073790	component RPS11 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc06g073800.3.1	Solyc06g073800	component RPS11 of SSU proteome	0.05	OrthoFinder output from all 47 species
Solyc12g042080.2.1	Solyc12g042080	component RPS11 of SSU proteome	0.03	OrthoFinder output from all 47 species
Spa_g08091	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g22575	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Spa_g31268	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g44672	No alias	component *(uS17) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e006955_P001	RPS11-BETA,...	component RPS11 of SSU proteome	0.04	OrthoFinder output from all 47 species
Zm00001e041635_P001	RPS11-BETA,...	component RPS11 of SSU proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032440	Ribosomal_S11_N	4	72
IPR000266	Ribosomal_S17/S11	74	142

External Links

No external refs found!

Sam_g12787

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation