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  5. Sam_g12536

Sam_g12536


Description : cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2) & original description: none


Gene families : OG0008467 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008467_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12536

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00097240 PTAC2,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 OrthoFinder output from all 47 species
AT1G74850 PTAC2 plastid transcriptionally active 2 0.03 OrthoFinder output from all 47 species
Aev_g01516 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
Ala_g08004 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
Als_g01158 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
Aop_g08821 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species
Ceric.39G041000.1 PTAC2, Ceric.39G041000 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species
Dcu_g07096 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.04 OrthoFinder output from all 47 species
GSVIVT01007844001 PTAC2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
LOC_Os03g60910.1 PTAC2, LOC_Os03g60910 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Lfl_g06742 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
MA_140582g0010 PTAC2 Pentatricopeptide repeat-containing protein At1g74850,... 0.03 OrthoFinder output from all 47 species
Mp7g11380.1 PTAC2 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Ore_g06175 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
Ppi_g03241 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0150.g023343 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.04 OrthoFinder output from all 47 species
Tin_g27885 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 272 331
IPR002885 Pentatricopeptide_repeat 636 681
IPR002885 Pentatricopeptide_repeat 603 631
IPR002885 Pentatricopeptide_repeat 224 242
IPR002885 Pentatricopeptide_repeat 708 736
IPR002885 Pentatricopeptide_repeat 494 541
IPR002885 Pentatricopeptide_repeat 354 399
IPR002885 Pentatricopeptide_repeat 424 471
No external refs found!