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  5. Sam_g12429

Sam_g12429


Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12429

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00085p00052820 CDC48A, CDC48,... Cell division cycle protein 48 homolog OS=Glycine max 0.03 OrthoFinder output from all 47 species
AMTR_s00095p00091200 CIP111,... Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT2G03670 CDC48B cell division cycle 48B 0.04 OrthoFinder output from all 47 species
AT3G01610 emb1354, CDC48C cell division cycle 48C 0.02 OrthoFinder output from all 47 species
AT5G03340 No alias ATPase, AAA-type, CDC48 protein 0.04 OrthoFinder output from all 47 species
Adi_g080379 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15787 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g32077 CIP111 platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g77518 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09095 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007689001 No alias Cell division cycle protein 48 homolog OS=Glycine max 0.03 OrthoFinder output from all 47 species
GSVIVT01025783001 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Lfl_g28209 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g12350.1 emb1354, CDC48C Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp3g20500.1 CDC48B Cell division control protein 48 homolog B... 0.05 OrthoFinder output from all 47 species
Ore_g03860 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19173 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40907 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01985 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13016 CIP111 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13901 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g068330.4.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species
Zm00001e000416_P002 Zm00001e000416 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Zm00001e035514_P002 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.05 OrthoFinder output from all 47 species
Zm00001e041158_P001 CDC48B, Zm00001e041158 Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 558 590
IPR041569 AAA_lid_3 872 914
IPR031996 NVL2_nucleolin-bd 23 79
IPR003959 ATPase_AAA_core 721 849
IPR003959 ATPase_AAA_core 387 533
No external refs found!