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  5. Lfl_g26562

Lfl_g26562


Description : not classified & original description: none


Gene families : OG0002372 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002372_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g26562

Target Alias Description ECC score Gene Family Method Actions
Adi_g003214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035444 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080317 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30546 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28682 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33549 MEF19 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68075 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43228 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50233 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g14697 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18121 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33040 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g35754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40075 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10605 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10606 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g29894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32623 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g58531 CRR21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006784 No alias not classified & original description: CDS=116-670 0.03 OrthoFinder output from all 47 species
Spa_g25557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48804 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49147 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53360 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g19797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27510 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g28102 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004535 poly(A)-specific ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 175 222
No external refs found!