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  5. Sam_g10979

Sam_g10979


Description : not classified & original description: none


Gene families : OG0001145 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001145_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10979

Target Alias Description ECC score Gene Family Method Actions
AT5G62440 No alias Protein of unknown function (DUF3223) 0.08 OrthoFinder output from all 47 species
Aev_g09817 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07808 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0205.g057729 No alias not classified & original description: CDS=55-822 0.03 OrthoFinder output from all 47 species
Cba_g11918 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.04G044700.1 Ceric.04G044700 not classified & original description: pacid=50632335... 0.06 OrthoFinder output from all 47 species
Ceric.24G080300.1 Ceric.24G080300 not classified & original description: pacid=50628596... 0.07 OrthoFinder output from all 47 species
Dac_g11380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g00538 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007999001 No alias Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
MA_77759g0010 No alias Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
Mp1g29710.1 No alias Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Msp_g13022 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g09873 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011095 No alias not classified & original description: CDS=169-912 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021045 No alias not classified & original description: CDS=1-735 0.03 OrthoFinder output from all 47 species
Smo442719 No alias Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc03g116020.3.1 Solyc03g116020 Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Spa_g15579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10429 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e023814_P002 Zm00001e023814 Protein DCL, chloroplastic OS=Solanum lycopersicum... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!