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  5. Sam_g10919

Sam_g10919


Description : plastidial RNA splicing factor *(cPTH)) & original description: none


Gene families : OG0001693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001693_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10919

Target Alias Description ECC score Gene Family Method Actions
Aev_g04522 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.03 OrthoFinder output from all 47 species
Ala_g00940 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g16356 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.05 OrthoFinder output from all 47 species
Dde_g14720 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g41554 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.03 OrthoFinder output from all 47 species
Len_g12640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11831 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08308 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g18215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g32072 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR001328 Pept_tRNA_hydro 39 221
No external refs found!