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  5. Sam_g10588

Sam_g10588


Description : not classified & original description: none


Gene families : OG0008483 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008483_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10588
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
Adi_g018628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11433 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g18799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20059 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene58265.t1 Aspi01Gene58265 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene58266.t1 Aspi01Gene58266 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g008132 No alias not classified & original description: CDS=109-1671 0.04 OrthoFinder output from all 47 species
Ceric.39G049100.1 Ceric.39G049100 not classified & original description: pacid=50583129... 0.07 OrthoFinder output from all 47 species
Dcu_g09097 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14896 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38637 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g11286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12407 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014167 No alias not classified & original description: CDS=261-1784 0.03 OrthoFinder output from all 47 species
Spa_g11012 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEP HCCA
BP GO:0010275 NAD(P)H dehydrogenase complex assembly IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013848 Methylthiotransferase_N 66 163
IPR002792 TRAM_dom 441 503
IPR007197 rSAM 209 387
No external refs found!