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  5. Sam_g10545

Sam_g10545


Description : large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex & original description: none


Gene families : OG0006164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10545

Target Alias Description ECC score Gene Family Method Actions
Ala_g22699 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.02 OrthoFinder output from all 47 species
Dcu_g19428 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
GSVIVT01016531001 PAT2 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Smo118138 PAT2 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Solyc06g043030.4.1 PAT2, Solyc06g043030 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 35 438
IPR002553 Clathrin/coatomer_adapt-like_N 475 618
No external refs found!