Sam_g09820

Description : component *(uL3) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001891_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g09820

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00269670	RP1, RPL3A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00060p00174830	RP1, RPL3A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00135p00091990	RP1, RPL3A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AT1G43170	RP1, RPL3A, emb2207, ARP1	ribosomal protein 1	0.03	OrthoFinder output from all 47 species
Adi_g105187	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g32693	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g10507	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g11770	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0015.g013966	RP1, RPL3A, emb2207, ARP1	component *(uL3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Azfi_s0113.g045879	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.22G040700.1	RPL3B, ARP2,...	component *(uL3) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.26G061200.1	RPL3B, ARP2,...	component *(uL3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000025.50	RPL3B, ARP2	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre10.g417700	RP1, RPL3A, emb2207, ARP1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Dac_g13025	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dde_g49884	RPL3B, ARP2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01023241001	RPL3B, ARP2	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
GSVIVT01034555001	RP1, RPL3A, emb2207, ARP1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Gb_35746	RP1, RPL3A, emb2207, ARP1	component RPL3 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os11g06750.1	RP1, RPL3A,...	component RPL3 of LSU proteome component	0.05	OrthoFinder output from all 47 species
LOC_Os12g07010.1	RP1, RPL3A,...	component RPL3 of LSU proteome component	0.05	OrthoFinder output from all 47 species
MA_10432758g0010	RP1, RPL3A, emb2207, ARP1	component RPL3 of LSU proteome component	0.04	OrthoFinder output from all 47 species
MA_124178g0010	RPL3B, ARP2	component RPL3 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Mp1g18990.1	RPL3B, ARP2	component RPL3 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Msp_g08488	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Msp_g35553	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g04174	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pp3c10_25460V3.1	RPL3B, ARP2, Pp3c10_25460	R-protein L3 B	0.05	OrthoFinder output from all 47 species
Ppi_g54601	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Solyc01g104590.3.1	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Spa_g10027	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Spa_g48300	RP1, RPL3A, emb2207, ARP1	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g55689	RPL3B, ARP2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e001224_P002	RP1, RPL3A,...	component RPL3 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e008122_P001	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e008127_P001	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Zm00001e009061_P001	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Zm00001e009065_P002	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	HCCA
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_L3	1	370

External Links

No external refs found!

Sam_g09820

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation