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Sam_g09033


Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g09033
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
Ceric.22G009200.1 Ceric.22G009200 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g31919 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Msp_g13593 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g01122 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Ore_g20938 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Ore_g29651 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Pir_g09790 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Spa_g07827 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 412 475
IPR001606 ARID_dom 183 266
No external refs found!