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  5. Sam_g08518

Sam_g08518


Description : not classified & original description: none


Gene families : OG0002172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002172_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g08518

Target Alias Description ECC score Gene Family Method Actions
Adi_g018683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g10869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.29G019200.1 Ceric.29G019200 not classified & original description: pacid=50625656... 0.03 OrthoFinder output from all 47 species
Ceric.39G012300.1 Ceric.39G012300 not classified & original description: pacid=50582599... 0.03 OrthoFinder output from all 47 species
LOC_Os01g55270.1 LOC_Os01g55270 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g22034 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g17050.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002212 No alias not classified & original description: CDS=58-687 0.04 OrthoFinder output from all 47 species
Spa_g11993 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14940 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR015120 Siah-Interact_N 4 51
IPR007052 CS_dom 65 140
No external refs found!