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Description : not classified & original description: none
Gene families : OG0006545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006545_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sam_g07959 | |
| Cluster | HCCA: Cluster_115 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00002p00268520 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g23020... | 0.02 | OrthoFinder output from all 47 species | |
| AT3G23020 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | OrthoFinder output from all 47 species | |
| Ceric.27G000500.1 | Ceric.27G000500 | not classified & original description: pacid=50606226... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g09918 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ehy_g02921 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Gb_11434 | No alias | Pentatricopeptide repeat-containing protein At1g73710... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10426616g0010 | No alias | Pentatricopeptide repeat-containing protein At1g73710... | 0.03 | OrthoFinder output from all 47 species | |
| Smo77736 | No alias | Pentatricopeptide repeat-containing protein At3g23020... | 0.01 | OrthoFinder output from all 47 species | |
| Solyc09g083110.3.1 | Solyc09g083110 | Pentatricopeptide repeat-containing protein At3g23020... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0004497 | monooxygenase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0004820 | glycine-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005506 | iron ion binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006426 | glycyl-tRNA aminoacylation | IEP | HCCA |
| MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | HCCA |
| MF | GO:0016782 | transferase activity, transferring sulphur-containing groups | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| MF | GO:0020037 | heme binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0031072 | heat shock protein binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035596 | methylthiotransferase activity | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046906 | tetrapyrrole binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| MF | GO:0050497 | alkylthioltransferase activity | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR033443 | PPR_long | 469 | 577 |
| IPR002885 | Pentatricopeptide_repeat | 699 | 737 |
| IPR002885 | Pentatricopeptide_repeat | 171 | 214 |
| IPR002885 | Pentatricopeptide_repeat | 279 | 326 |
| IPR002885 | Pentatricopeptide_repeat | 801 | 844 |
| IPR002885 | Pentatricopeptide_repeat | 875 | 899 |
| IPR002885 | Pentatricopeptide_repeat | 248 | 277 |
| IPR002885 | Pentatricopeptide_repeat | 352 | 382 |
| IPR002885 | Pentatricopeptide_repeat | 666 | 695 |
| IPR002885 | Pentatricopeptide_repeat | 632 | 660 |
| IPR002885 | Pentatricopeptide_repeat | 597 | 622 |
| No external refs found! |