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  5. Sam_g07643

Sam_g07643


Description : component *(uL3m) of large mitoribosomal-subunit proteome & original description: none


Gene families : OG0005827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005827_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g07643

Target Alias Description ECC score Gene Family Method Actions
AT3G17465 RPL3P ribosomal protein L3 plastid 0.02 OrthoFinder output from all 47 species
Als_g04883 RPL3P component *(uL3m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g02098 RPL3P component *(uL3m) of large mitoribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Azfi_s0003.g007996 RPL3P component *(uL3m) of large mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cba_g02523 RPL3P component *(uL3m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.33G054400.1 RPL3P, Ceric.33G054400 component *(uL3m) of large mitoribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001574.8 RPL3P No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01017688001 RPL3P Protein biosynthesis.organelle translation... 0.11 OrthoFinder output from all 47 species
Gb_28367 RPL3P component mtRPL3 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
LOC_Os01g14830.1 RPL3P, LOC_Os01g14830 component mtRPL3 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
MA_14906g0010 RPL3P component mtRPL3 of large ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species
MA_16256g0010 RPL3P 50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Pir_g10169 RPL3P component *(uL3m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Smo145395 RPL3P Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Spa_g06067 RPL3P component *(uL3m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Tin_g14446 RPL3P component *(uL3m) of large mitoribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Zm00001e025590_P001 RPL3P, Zm00001e025590 component mtRPL3 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 171 256
No external refs found!