Description : plasma membrane intrinsic protein *(PIP) & original description: none
Gene families : OG0000095 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000095_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Sam_g06802 | |
Cluster | HCCA: Cluster_7 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G39010 | PIP2E, PIP2;6 | plasma membrane intrinsic protein 2E | 0.03 | OrthoFinder output from all 47 species | |
Aev_g35092 | PIP2;1, PIP2, PIP2A | plasma membrane intrinsic protein *(PIP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Mp1g04190.1 | GAMMA-TIP,... | tonoplast intrinsic protein (TIP) | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g39739 | PIP2D, PIP2;5 | plasma membrane intrinsic protein *(PIP) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g41640 | PIP3, SIMIP,... | plasma membrane intrinsic protein *(PIP) & original... | 0.05 | OrthoFinder output from all 47 species | |
Pnu_g15984 | PIP2;1, PIP2, PIP2A | plasma membrane intrinsic protein *(PIP) & original... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0015267 | channel activity | IEA | Interproscan |
CC | GO:0016020 | membrane | IEA | Interproscan |
BP | GO:0055085 | transmembrane transport | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
MF | GO:0003724 | RNA helicase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004751 | ribose-5-phosphate isomerase activity | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
MF | GO:0008186 | ATP-dependent activity, acting on RNA | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
BP | GO:0009052 | pentose-phosphate shunt, non-oxidative branch | IEP | HCCA |
BP | GO:0009056 | catabolic process | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016853 | isomerase activity | IEP | HCCA |
MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | HCCA |
MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | HCCA |
BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000425 | MIP | 37 | 260 |
No external refs found! |