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  5. Lfl_g25979

Lfl_g25979


Description : component *(uS3) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001769_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g25979
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00219330 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AMTR_s00030p00157370 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT5G35530 No alias Ribosomal protein S3 family protein 0.05 OrthoFinder output from all 47 species
Adi_g083363 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g20217 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Als_g11830 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Als_g19714 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Als_g52107 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g10053 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Cba_g07331 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ceric.12G046300.1 Ceric.12G046300 component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021462.41 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Cre02.g102250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dde_g20443 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01016775001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01035451001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_13623 No alias component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os03g38000.1 LOC_Os03g38000 component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os07g41750.1 LOC_Os07g41750 component RPS3 of SSU proteome 0.02 OrthoFinder output from all 47 species
MA_120861g0010 No alias component RPS3 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.05 OrthoFinder output from all 47 species
Msp_g00955 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g06065 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g11610 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g61345 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c11_22640V3.1 Pp3c11_22640 Ribosomal protein S3 family protein 0.03 OrthoFinder output from all 47 species
Pp3c15_21360V3.1 Pp3c15_21360 Ribosomal protein S3 family protein 0.02 OrthoFinder output from all 47 species
Pp3c16_3760V3.1 Pp3c16_3760 Ribosomal protein S3 family protein 0.02 OrthoFinder output from all 47 species
Pp3c5_5330V3.1 Pp3c5_5330 Ribosomal protein S3 family protein 0.02 OrthoFinder output from all 47 species
Pp3c9_12170V3.1 Pp3c9_12170 Ribosomal protein S3 family protein 0.01 OrthoFinder output from all 47 species
Sam_g27040 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g27041 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo438700 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Solyc07g041310.3.1 Solyc07g041310 component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc08g061843.1.1 Solyc08g061843 component RPS3 of SSU proteome 0.05 OrthoFinder output from all 47 species
Spa_g10670 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g10672 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g54393 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e021687_P001 Zm00001e021687 component RPS3 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e040177_P002 Zm00001e040177 component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
BP GO:0007023 post-chaperonin tubulin folding pathway IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0048487 beta-tubulin binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 107 189
IPR004044 KH_dom_type_2 21 94
No external refs found!