Sam_g05664

Description : component *(eL13) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000911 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000911_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g05664

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00239970	BBC1, RSU2,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AT3G49010	BBC1, RSU2, ATBBC1	breast basic conserved 1	0.03	OrthoFinder output from all 47 species
Aev_g17815	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g24759	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g01579	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g28227	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.36	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Dac_g15740	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g26018	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01030767001	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os03g37970.1	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os06g02510.2	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp1g04920.1	BBC1, RSU2, ATBBC1	component RPL13 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp2g19790.1	BBC1, RSU2, ATBBC1	component RPL13 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Msp_g00929	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c1_26280V3.1	BBC1, RSU2,...	breast basic conserved 1	0.03	OrthoFinder output from all 47 species
Smo266648	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Spa_g14938	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g24037	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g31672	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e018804_P001	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e028430_P003	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001380	Ribosomal_L13e	8	187

External Links

No external refs found!

Sam_g05664

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation