Sam_g03396

Description : core component *(RpoC1) of plastid-encoded RNA polymerase & original description: none

Gene families : OG0006500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006500_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g03396
Cluster	HCCA: Cluster_151

Target	Alias	Description	ECC score	Gene Family Method
ATCG00180	RPOC1	DNA-directed RNA polymerase family protein	0.09	OrthoFinder output from all 47 species
Aev_g25869	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.1	OrthoFinder output from all 47 species
Als_g17479	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.06	OrthoFinder output from all 47 species
Cba_g01180	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.09	OrthoFinder output from all 47 species
Ceric.29G004700.1	RPOC1, Ceric.29G004700	not classified & original description: pacid=50625659...	0.07	OrthoFinder output from all 47 species
Ceric.38G010000.1	RPOC1, Ceric.38G010000	core component *(RpoC1) of plastid-encoded RNA...	0.03	OrthoFinder output from all 47 species
Dde_g17519	RPOC1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g14005	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.06	OrthoFinder output from all 47 species
Pir_g09480	RPOC1	core component *(RpoC1) of plastid-encoded RNA...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027469	No alias	not classified & original description: CDS=1-663	0.02	OrthoFinder output from all 47 species
Solyc01g017370.2.1	RPOC1, Solyc01g017370	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.04	OrthoFinder output from all 47 species
Solyc01g017470.3.1	RPOC1, Solyc01g017470	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.03	OrthoFinder output from all 47 species
Solyc08g014390.1.1	RPOC1, Solyc08g014390	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007080	RNA_pol_Rpb1_1	8	371
IPR000722	RNA_pol_asu	424	513
IPR000722	RNA_pol_asu	373	421

External Links

No external refs found!

Sam_g03396

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation