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  5. Sam_g01310

Sam_g01310


Description : component *(LHCa3) of LHC-I complex & original description: none


Gene families : OG0003350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003350_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g01310
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00059490 LHCA3,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.1 OrthoFinder output from all 47 species
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.06 OrthoFinder output from all 47 species
Adi_g042980 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Adi_g075747 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Aev_g02928 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05970 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g34376 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Als_g11489 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g03906 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03958 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g18182 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06037 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene65876.t1 LHCA3, Aspi01Gene65876 component *(LHCa3) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13564 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G011800.1 LHCA3, Ceric.18G011800 component *(LHCa3) of LHC-I complex & original... 0.13 OrthoFinder output from all 47 species
Ceric.18G011900.1 LHCA3, Ceric.18G011900 component *(LHCa3) of LHC-I complex & original... 0.08 OrthoFinder output from all 47 species
Cre11.g467573 LHCA3 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.07 OrthoFinder output from all 47 species
Dac_g34473 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g33769 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g13335 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g23566 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01019377001 LHCA3 Photosystem I chlorophyll a/b-binding protein 3-1,... 0.12 OrthoFinder output from all 47 species
Gb_10163 LHCA3 component LHCa3 of LHC-I complex 0.08 OrthoFinder output from all 47 species
LOC_Os02g10390.1 LHCA3, LOC_Os02g10390 component LHCa3 of LHC-I complex 0.06 OrthoFinder output from all 47 species
Len_g17078 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
MA_815900g0010 LHCA3 component LHCa3 of LHC-I complex 0.06 OrthoFinder output from all 47 species
Mp4g00930.1 LHCA3 component LHCa3 of LHC-I complex 0.11 OrthoFinder output from all 47 species
Msp_g02710 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27710 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g30216 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g33396 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g15180 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g28252 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Pp3c16_16040V3.1 LHCA3, Pp3c16_16040 photosystem I light harvesting complex gene 3 0.04 OrthoFinder output from all 47 species
Pp3c27_7010V3.1 LHCA3, Pp3c27_7010 photosystem I light harvesting complex gene 3 0.02 OrthoFinder output from all 47 species
Pp3c6_22090V3.1 LHCA3, Pp3c6_22090 photosystem I light harvesting complex gene 3 0.03 OrthoFinder output from all 47 species
Ppi_g44081 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017111 LHCA3 component *(LHCa3) of LHC-I complex & original... 0.1 OrthoFinder output from all 47 species
Solyc10g007690.3.1 LHCA3, Solyc10g007690 component LHCa3 of LHC-I complex 0.09 OrthoFinder output from all 47 species
Solyc12g011280.2.1 LHCA3, Solyc12g011280 component LHCa3 of LHC-I complex 0.04 OrthoFinder output from all 47 species
Spa_g07265 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g01697 LHCA3 component *(LHCa3) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 69 248
No external refs found!