Sam_g00835

Description : component *(uL22) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001495_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g00835
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00159640	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AMTR_s00013p00211990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00013p00223470	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00013p00224030	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AT1G27400	No alias	Ribosomal protein L22p/L17e family protein	0.07	OrthoFinder output from all 47 species
AT1G67430	No alias	Ribosomal protein L22p/L17e family protein	0.05	OrthoFinder output from all 47 species
Adi_g041566	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aev_g23375	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g23480	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g34478	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g03684	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g49076	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0243.g059889	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s2217.g109896	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.02G040500.1	Ceric.02G040500	component *(uL22) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ceric.36G028400.1	Ceric.36G028400	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001215.8	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Cre13.g568900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Dac_g15760	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dac_g23579	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g32685	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01008528001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01010450001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
LOC_Os08g41810.1	LOC_Os08g41810	component RPL17 of LSU proteome component	0.02	OrthoFinder output from all 47 species
LOC_Os09g08430.1	LOC_Os09g08430	component RPL17 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Len_g00941	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_10430182g0010	No alias	component RPL17 of LSU proteome component	0.04	OrthoFinder output from all 47 species
MA_64923g0010	No alias	component RPL17 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Mp1g10230.1	No alias	component RPL17 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Nbi_g27595	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c11_5840V3.1	Pp3c11_5840	Ribosomal protein L22p/L17e family protein	0.03	OrthoFinder output from all 47 species
Pp3c1_6650V3.1	Pp3c1_6650	Ribosomal protein L22p/L17e family protein	0.04	OrthoFinder output from all 47 species
Ppi_g07930	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g27245	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g37392	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g15137	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g44519	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Smo96251	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc06g071870.3.1	Solyc06g071870	component RPL17 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Solyc06g071880.4.1	Solyc06g071880	component RPL17 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g12589	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Spa_g15052	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g51098	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Tin_g04902	No alias	component *(uL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e003661_P001	Zm00001e003661	component RPL17 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Zm00001e005470_P001	Zm00001e005470	component RPL17 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e021953_P003	Zm00001e021953	component RPL17 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e026882_P002	Zm00001e026882	component RPL17 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Zm00001e031261_P001	Zm00001e031261	component RPL17 of LSU proteome component	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001063	Ribosomal_L22	19	153

External Links

No external refs found!

Sam_g00835

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation