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  5. Aob_g41078

Aob_g41078


Description : not classified & original description: none


Gene families : OG0004671 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004671_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g41078

Target Alias Description ECC score Gene Family Method Actions
Aop_g19619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010488 No alias not classified & original description: CDS=11-2284 0.02 OrthoFinder output from all 47 species
Ceric.31G036700.1 Ceric.31G036700 not classified & original description: pacid=50575087... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021038.94 No alias No description available 0.01 OrthoFinder output from all 47 species
MA_708045g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Pir_g66155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s1030.g027923 No alias not classified & original description: CDS=21-2210 0.03 OrthoFinder output from all 47 species
Zm00001e016417_P001 Zm00001e016417 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006073 GTP-bd 241 362
IPR006073 GTP-bd 438 561
IPR032859 KH_dom-like 625 704
No external refs found!