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Description : E3 ubiquitin ligase component *(LTN1) of Ribosome-associated Quality Control (RQC) complex & original description: none
Gene families : OG0004253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004253_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Aob_g32442 | |
| Cluster | HCCA: Cluster_163 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Ala_g02723 | No alias | E3 ubiquitin ligase component *(LTN1) of... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g14462 | No alias | E3 ubiquitin ligase component *(LTN1) of... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene04224.t1 | Aspi01Gene04224 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.12G054400.1 | Ceric.12G054400 | E3 ubiquitin ligase component *(LTN1) of... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000144.121 | No alias | E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g23367 | No alias | E3 ubiquitin ligase component *(LTN1) of... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g06231 | No alias | E3 ubiquitin ligase component *(LTN1) of... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g23467 | No alias | E3 ubiquitin ligase component *(LTN1) of... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g25793 | No alias | E3 ubiquitin ligase component *(LTN1) of... | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g37240 | No alias | E3 ubiquitin ligase component *(LTN1) of... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g25985 | No alias | E3 ubiquitin ligase component *(LTN1) of... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g055260.4.1 | Solyc09g055260 | E3 ubiquitin-protein ligase listerin OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g19461 | No alias | E3 ubiquiTin ligase component *(LTN1) of... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e009194_P003 | Zm00001e009194 | E3 ubiquitin ligase component LTN1 of... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006457 | protein folding | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
| MF | GO:0044183 | protein folding chaperone | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140662 | ATP-dependent protein folding chaperone | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 1966 | 2014 |
| No external refs found! |