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  5. Aob_g27014

Aob_g27014 (SNL3, ATSIN3, SIN3)


Aliases : SNL3, ATSIN3, SIN3

Description : component *(SNL) of histone deacetylase machineries & original description: none


Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g27014
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AT1G10450 SNL6 SIN3-like 6 0.04 OrthoFinder output from all 47 species
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.08 OrthoFinder output from all 47 species
AT1G24220 No alias paired amphipathic helix repeat-containing protein 0.02 OrthoFinder output from all 47 species
AT1G70060 SNL4 SIN3-like 4 0.03 OrthoFinder output from all 47 species
AT3G01320 SNL1 SIN3-like 1 0.09 OrthoFinder output from all 47 species
AT5G15020 SNL2 SIN3-like 2 0.11 OrthoFinder output from all 47 species
Adi_g013447 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Adi_g057345 SNL2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g058426 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Adi_g088432 SNL3, ATSIN3, SIN3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g103364 SNL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117146 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Aev_g21851 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ala_g17667 SNL4 component *(SNL) of histone deacetylase machineries &... 0.09 OrthoFinder output from all 47 species
Ala_g21578 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.09 OrthoFinder output from all 47 species
Als_g18269 SNL4 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Als_g32002 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Als_g42067 SNL4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g52097 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Als_g52098 SNL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00817 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene32665.t1 SNL4, Aspi01Gene32665 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene46934.t1 SNL3, ATSIN3,... component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene57592.t3 SNL5, Aspi01Gene57592 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0048.g030537 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Cba_g06817 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g16029 SNL4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g77516 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ceric.02G103500.1 SNL3, ATSIN3,... component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Ceric.02G103800.1 SNL4, Ceric.02G103800 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Ceric.31G072300.1 SNL4, Ceric.31G072300 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.28 SNL3, ATSIN3, SIN3 Paired amphipathic helix protein Sin3-like 1... 0.02 OrthoFinder output from all 47 species
Dac_g01796 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Dcu_g18941 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Dcu_g18942 SNL4 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Dde_g18720 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Ehy_g07946 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Ehy_g08326 SNL3, ATSIN3, SIN3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10036 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
GSVIVT01020136001 SNL3, ATSIN3, SIN3 Chromatin organisation.histone modifications.histone... 0.06 OrthoFinder output from all 47 species
GSVIVT01032579001 SNL2 Chromatin organisation.histone modifications.histone... 0.06 OrthoFinder output from all 47 species
Gb_35988 SNL4 component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
LOC_Os05g01020.2 SNL4, LOC_Os05g01020 component SNL of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
Len_g04844 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Len_g20482 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Len_g58076 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Lfl_g03517 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
MA_18241g0010 SNL4 component SNL of histone deacetylase machineries 0.1 OrthoFinder output from all 47 species
MA_8638132g0010 SNL4 Paired amphipathic helix protein Sin3-like 3... 0.02 OrthoFinder output from all 47 species
Mp7g11300.1 SNL5 Paired amphipathic helix protein Sin3-like 2... 0.03 OrthoFinder output from all 47 species
Msp_g06593 SNL4 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Msp_g24890 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Nbi_g03860 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Ore_g30140 SNL4 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Ore_g30141 SNL2 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Pir_g18041 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ppi_g01419 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0277.g027077 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Sam_g14557 No alias component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Sam_g25571 No alias component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Smo440352 SNL4 Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Solyc02g067570.3.1 SNL2, Solyc02g067570 component SNL of histone deacetylase machineries 0.09 OrthoFinder output from all 47 species
Solyc02g087360.4.1 SNL2, Solyc02g087360 component SNL of histone deacetylase machineries 0.06 OrthoFinder output from all 47 species
Spa_g15712 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Spa_g18268 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Tin_g13041 SNL4 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Tin_g19320 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Zm00001e017111_P002 SNL4, Zm00001e017111 component SNL of histone deacetylase machineries 0.08 OrthoFinder output from all 47 species
Zm00001e025644_P001 SNL4, Zm00001e025644 component SNL of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013194 HDAC_interact_dom 508 598
IPR003822 PAH 366 410
IPR003822 PAH 144 187
IPR003822 PAH 59 102
IPR031693 Sin3_C 1206 1453
No external refs found!