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Description : component *(SOP1) of PAXT RNA-exosome-activation complex & original description: none
Gene families : OG0004256 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004256_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G21580 | No alias | Zinc finger C-x8-C-x5-C-x3-H type family protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g086844 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g21965 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g33279 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.23G086900.1 | Ceric.23G086900 | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g07964 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01008802001 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.05 | OrthoFinder output from all 47 species | |
| Len_g41224 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g16590 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.06 | OrthoFinder output from all 47 species | |
| MA_645381g0010 | No alias | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species | |
| Nbi_g12684 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g44276 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g15166 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g21810 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g15340 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g22203 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g16673 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e037509_P004 | Zm00001e037509 | RNA degradation surveillance factor (SOP1) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |