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  5. Aob_g18418

Aob_g18418 (PUM7, APUM7)


Aliases : PUM7, APUM7

Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g18418

Target Alias Description ECC score Gene Family Method Actions
AT1G22240 APUM8, PUM8 pumilio 8 0.02 OrthoFinder output from all 47 species
Adi_g008224 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18476 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03238 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72050.t1 APUM12, PUM12,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.30G062000.1 PUM7, APUM7,... not classified & original description: pacid=50608347... 0.03 OrthoFinder output from all 47 species
Dcu_g13050 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025489001 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01033396001 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_41365 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016386 APUM8, PUM8 not classified & original description: CDS=1-2142 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0190.g025276 APUM12, PUM12 not classified & original description: CDS=601-3087 0.02 OrthoFinder output from all 47 species
Spa_g13343 APUM12, PUM12 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 741 772
IPR001313 Pumilio_RNA-bd_rpt 631 661
IPR001313 Pumilio_RNA-bd_rpt 595 624
IPR001313 Pumilio_RNA-bd_rpt 519 552
IPR001313 Pumilio_RNA-bd_rpt 666 699
IPR001313 Pumilio_RNA-bd_rpt 780 809
IPR001313 Pumilio_RNA-bd_rpt 555 588
IPR001313 Pumilio_RNA-bd_rpt 704 723
No external refs found!