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  5. Aob_g17001

Aob_g17001 (AFP3)


Aliases : AFP3

Description : transcriptional co-repressor *(AFP/NINJA) & original description: none


Gene families : OG0001010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g17001
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00255370 AFP3,... RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.04 OrthoFinder output from all 47 species
AT1G69260 AFP1 ABI five binding protein 0.01 OrthoFinder output from all 47 species
Adi_g087487 AFP3 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g35216 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene30684.t1 NINJA, Aspi01Gene30684 transcriptional co-repressor *(AFP/NINJA) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene31743.t1 Aspi01Gene31743 transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Cba_g26778 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.04 OrthoFinder output from all 47 species
Ceric.34G010700.1 NINJA, Ceric.34G010700 not classified & original description: pacid=50622924... 0.06 OrthoFinder output from all 47 species
Dcu_g01909 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003927001 No alias RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.08 OrthoFinder output from all 47 species
GSVIVT01012225001 AFP2 RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.04 OrthoFinder output from all 47 species
Lfl_g23340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28105 NINJA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g37601 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20146 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02348 AFP3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g18071 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo446487 AFP3 RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 862 893
No external refs found!