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  5. Aob_g14440

Aob_g14440


Description : component *(CASC3) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g14440

Target Alias Description ECC score Gene Family Method Actions
AT1G15280 No alias CASC3/Barentsz eIF4AIII binding 0.03 OrthoFinder output from all 47 species
Adi_g004430 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074719 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aev_g20399 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aspi01Gene44752.t1 Aspi01Gene44752 component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aspi01Gene44752.t2 Aspi01Gene44752 component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cba_g75996 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.15G073300.1 Ceric.15G073300 component *(CASC3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Ceric.26G046100.1 Ceric.26G046100 component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Dac_g09674 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Dde_g08014 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ehy_g30112 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
GSVIVT01017130001 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
LOC_Os01g41190.2 LOC_Os01g41190 component CASC3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Lfl_g07367 No alias component *(CASC3) of RNA quality control Exon Junction... 0.08 OrthoFinder output from all 47 species
Lfl_g38046 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Mp8g03760.1 No alias component CASC3 of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
Sam_g27144 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Solyc03g120300.3.1 Solyc03g120300 component CASC3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Solyc12g042990.3.1 Solyc12g042990 component CASC3 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Zm00001e020605_P001 Zm00001e020605 component CASC3 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
CC GO:0035145 exon-exon junction complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006835 dicarboxylic acid transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015740 C4-dicarboxylate transport IEP HCCA
BP GO:0015743 malate transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR018545 Btz_dom 146 220
No external refs found!