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  5. Aob_g12486

Aob_g12486 (ATINO80, INO80)


Aliases : ATINO80, INO80

Description : ATPase component *(Ino80) of chromatin remodelling complex & original description: none


Gene families : OG0003922 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003922_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g12486

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00190690 ATINO80, INO80,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
AT3G57300 ATINO80, INO80 INO80 ortholog 0.04 OrthoFinder output from all 47 species
Ala_g22698 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.09 OrthoFinder output from all 47 species
Als_g16557 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.04 OrthoFinder output from all 47 species
Aop_g19078 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.05 OrthoFinder output from all 47 species
Aspi01Gene61036.t1 ATINO80, INO80,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G047900.1 ATINO80, INO80,... ATPase component *(Ino80) of chromatin remodelling... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021501.9 ATINO80, INO80 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dcu_g11743 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.07 OrthoFinder output from all 47 species
Dde_g25805 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.05 OrthoFinder output from all 47 species
Ehy_g12559 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.02 OrthoFinder output from all 47 species
GSVIVT01033231001 ATINO80, INO80 Chromatin organisation.chromatin remodeling... 0.08 OrthoFinder output from all 47 species
Gb_04007 ATINO80, INO80 ATPase component Ino80 of chromatin remodelling complex 0.03 OrthoFinder output from all 47 species
LOC_Os03g22900.1 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.06 OrthoFinder output from all 47 species
Len_g14744 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.02 OrthoFinder output from all 47 species
Lfl_g05043 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.03 OrthoFinder output from all 47 species
MA_3312g0010 ATINO80, INO80 ATPase component Ino80 of chromatin remodelling complex 0.04 OrthoFinder output from all 47 species
Mp8g00130.1 ATINO80, INO80 ATPase component Ino80 of chromatin remodelling complex 0.05 OrthoFinder output from all 47 species
Msp_g14197 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.02 OrthoFinder output from all 47 species
Ore_g02728 ATINO80, INO80 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08475 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023246 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.06 OrthoFinder output from all 47 species
Sam_g11608 No alias ATPase component *(Ino80) of chromatin remodelling... 0.03 OrthoFinder output from all 47 species
Smo444050 ATINO80, INO80 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Solyc04g016370.3.1 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.05 OrthoFinder output from all 47 species
Spa_g41400 ATINO80, INO80 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001678_P001 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.05 OrthoFinder output from all 47 species
Zm00001e038194_P002 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 1280 1392
IPR000330 SNF2_N 685 972
IPR020838 DBINO 435 563
No external refs found!