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  5. Aob_g12355

Aob_g12355 (RAD50, ATRAD50)


Aliases : RAD50, ATRAD50

Description : component *(RAD50) of DNA resection MRE11-RAD50-NBS1 (MRN) complex & original description: none


Gene families : OG0005654 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005654_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g12355
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00258230 RAD50, ATRAD50,... DNA damage response.DNA repair mechanisms.homologous... 0.03 OrthoFinder output from all 47 species
AT2G31970 RAD50, ATRAD50 DNA repair-recombination protein (RAD50) 0.07 OrthoFinder output from all 47 species
Adi_g023143 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.02 OrthoFinder output from all 47 species
Als_g01975 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Aop_g01400 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Ceric.14G029200.1 RAD50, ATRAD50,... component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.09 OrthoFinder output from all 47 species
Ceric.1Z239700.1 RAD50, ATRAD50,... component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.06 OrthoFinder output from all 47 species
Cre03.g192550 RAD50, ATRAD50 DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
Dcu_g08986 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.06 OrthoFinder output from all 47 species
Ehy_g20387 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.02 OrthoFinder output from all 47 species
Lfl_g03493 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Mp5g04390.1 RAD50, ATRAD50 component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004289 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Smo405818 RAD50, ATRAD50 DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
Solyc05g053800.3.1 RAD50, ATRAD50,... component RAD50 of MRE11-RAD50-NBS1 (MRN) complex.... 0.02 OrthoFinder output from all 47 species
Spa_g00478 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.03 OrthoFinder output from all 47 species
Tin_g02909 RAD50, ATRAD50 component *(RAD50) of DNA resection MRE11-RAD50-NBS1... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0140664 ATP-dependent DNA damage sensor activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013134 Zn_hook_RAD50 751 789
IPR038729 Rad50/SbcC_AAA 7 249
No external refs found!