Lfl_g22212

Description : component *(uS11) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001893 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001893_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g22212
Cluster	HCCA: Cluster_52

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00104960	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AT2G36160	No alias	Ribosomal protein S11 family protein	0.03	OrthoFinder output from all 47 species
AT3G11510	No alias	Ribosomal protein S11 family protein	0.02	OrthoFinder output from all 47 species
AT3G52580	No alias	Ribosomal protein S11 family protein	0.03	OrthoFinder output from all 47 species
Ala_g00543	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ala_g20351	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g04340	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.01G067700.1	Ceric.01G067700	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.38G005500.1	Ceric.38G005500	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001154.44	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Dac_g08660	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01036096001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
LOC_Os02g33140.1	LOC_Os02g33140	component RPS14 of SSU proteome	0.03	OrthoFinder output from all 47 species
MA_113075g0010	No alias	component RPS14 of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp8g10900.1	No alias	component RPS14 of SSU proteome	0.04	OrthoFinder output from all 47 species
Msp_g36870	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Pp3c15_22240V3.1	Pp3c15_22240	Ribosomal protein S11 family protein	0.02	OrthoFinder output from all 47 species
Pp3c9_21480V3.1	Pp3c9_21480	Ribosomal protein S11 family protein	0.01	OrthoFinder output from all 47 species
Sam_g35851	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo183051	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc09g010100.3.1	Solyc09g010100	component RPS14 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc10g083280.4.1	Solyc10g083280	component RPS14 of SSU proteome	0.03	OrthoFinder output from all 47 species
Zm00001e022659_P002	Zm00001e022659	component RPS14 of SSU proteome	0.03	OrthoFinder output from all 47 species
Zm00001e030303_P001	Zm00001e030303	component RPS14 of SSU proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016832	aldehyde-lyase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
CC	GO:0061617	MICOS complex	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001971	Ribosomal_S11	30	148

External Links

No external refs found!

Lfl_g22212

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation